catalight
latest
Introduction:
Welcome to Catalight!
Installation instructions
User Guide:
How it works
Usage
Equipment specific guides
Data analysis
Auxiliary tools
Development Guide:
Providing feedback
Developing equipment drivers
Creating new experiment types
Making changes to the GUI
Areas for future development
Writing documentation
Examples:
Examples
Documentation:
API
Tests
catalight
Index
Edit on GitHub
Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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X
_
__init__() (catalight.analysis.chromatogram_scanner_gui.MainWindow method)
(catalight.analysis.gcdata.GCData method)
(catalight.analysis.user_inputs.DataExtractor method)
(catalight.analysis.user_inputs.DirectorySelector method)
(catalight.analysis.user_inputs.MyDelegate method)
(catalight.analysis.user_inputs.Option method)
(catalight.analysis.user_inputs.PlotOptionList method)
(catalight.analysis.user_inputs.PlotOptionsDialog method)
(catalight.catalight_GUI.EmittingStream method)
(catalight.catalight_GUI.MainWindow method)
(catalight.catalight_GUI.Worker method)
(catalight.catalight_GUI.WorkerSignal method)
(catalight.equipment.experiment_control.Experiment method)
(catalight.equipment.gas_control.alicat.Gas_System method)
(catalight.equipment.gas_control.template.Gas_System method)
(catalight.equipment.gc_control.sri_gc.GC_Connector method)
(catalight.equipment.gc_control.template.GC_Connector method)
(catalight.equipment.heating.template.Heater method)
(catalight.equipment.heating.watlow.Heater method)
(catalight.equipment.light_sources.diode_control.Diode_Laser method)
(catalight.equipment.light_sources.diode_control.RepeatTimer method)
(catalight.equipment.light_sources.template.RepeatTimer method)
(catalight.equipment.light_sources.template.Template_Laser method)
(catalight.equipment.power_meter.newport.NewportMeter method)
A
accept() (catalight.analysis.user_inputs.DataExtractor method)
(catalight.analysis.user_inputs.PlotOptionsDialog method)
add_expt() (catalight.catalight_GUI.MainWindow method)
ai_info (catalight.equipment.light_sources.diode_control.Diode_Laser property)
ai_range (catalight.equipment.light_sources.diode_control.Diode_Laser property)
analyze_cal_data() (in module catalight.analysis.tools)
ao_info (catalight.equipment.light_sources.diode_control.Diode_Laser property)
ao_range (catalight.equipment.light_sources.diode_control.Diode_Laser property)
apex_ind (catalight.analysis.gcdata.GCData attribute)
apex_inds() (catalight.analysis.gcdata.GCData method)
B
basecorrect (catalight.analysis.user_inputs.PlotOptionList attribute)
baseline_correction() (catalight.analysis.gcdata.GCData method)
board_num (catalight.equipment.light_sources.diode_control.Diode_Laser attribute)
build_results_dict() (in module catalight.analysis.tools)
C
calculate_X_and_S() (in module catalight.analysis.tools)
cancel() (catalight.analysis.user_inputs.DataExtractor method)
catalight
module
catalight.analysis
module
catalight.analysis.chromatogram_scanner_gui
module
catalight.analysis.gcdata
module
catalight.analysis.make_empty_cal_expt
module
catalight.analysis.plotting
module
catalight.analysis.run_calibration
module
catalight.analysis.run_change_xdata
module
catalight.analysis.run_initial_analysis
module
catalight.analysis.run_plot_chromatograms_stacked
module
catalight.analysis.run_plot_comparison
module
catalight.analysis.tools
module
catalight.analysis.user_inputs
module
catalight.catalight_GUI
module
catalight.equipment
module
catalight.equipment.alicat_connection_tester
module
catalight.equipment.experiment_control
module
catalight.equipment.gas_control
module
catalight.equipment.gas_control.alicat
module
catalight.equipment.gas_control.template
module
catalight.equipment.gc_control
module
catalight.equipment.gc_control.peaksimple_control_demo
module
catalight.equipment.gc_control.sri_gc
module
catalight.equipment.gc_control.template
module
catalight.equipment.gc_delay_tester
module
catalight.equipment.heating
module
catalight.equipment.heating.template
module
catalight.equipment.heating.watlow
module
catalight.equipment.light_sources
module
catalight.equipment.light_sources.diode_control
module
catalight.equipment.light_sources.template
module
catalight.equipment.power_meter
module
catalight.equipment.power_meter.newport
module
catalight.equipment.run_diode_calibration
module
change_color_signal (catalight.catalight_GUI.MainWindow attribute)
change_includes() (catalight.analysis.user_inputs.PlotOptionList method)
change_wavelength() (catalight.equipment.power_meter.newport.NewportMeter method)
check_comp_total() (catalight.equipment.gas_control.alicat.Gas_System method)
(catalight.equipment.gas_control.template.Gas_System method)
closeEvent() (catalight.catalight_GUI.MainWindow method)
connect() (catalight.equipment.gc_control.sri_gc.GC_Connector method)
(catalight.equipment.gc_control.template.GC_Connector method)
connect_manual_ctrl() (catalight.catalight_GUI.MainWindow method)
convert_index() (in module catalight.analysis.tools)
convert_temp() (in module catalight.equipment.heating.template)
(in module catalight.equipment.heating.watlow)
convert_to_ppm() (catalight.analysis.gcdata.GCData method)
create_dirs() (catalight.equipment.experiment_control.Experiment method)
createEditor() (catalight.analysis.user_inputs.MyDelegate method)
ctrl_file (catalight.equipment.gc_control.sri_gc.GC_Connector attribute)
D
daq_dev_info (catalight.equipment.light_sources.diode_control.Diode_Laser property)
data_path (catalight.equipment.experiment_control.Experiment property)
DataExtractor (class in catalight.analysis.user_inputs)
date (catalight.equipment.experiment_control.Experiment property)
delete_expt() (catalight.catalight_GUI.MainWindow method)
Diode_Laser (class in catalight.equipment.light_sources.diode_control)
DirectorySelector (class in catalight.analysis.user_inputs)
disconnect() (catalight.catalight_GUI.MainWindow method)
(catalight.equipment.gas_control.alicat.Gas_System method)
(catalight.equipment.gas_control.template.Gas_System method)
(catalight.equipment.gc_control.sri_gc.GC_Connector method)
(catalight.equipment.gc_control.template.GC_Connector method)
(catalight.equipment.heating.template.Heater method)
(catalight.equipment.heating.watlow.Heater method)
display_expt() (catalight.catalight_GUI.MainWindow method)
E
emergency_stop() (catalight.catalight_GUI.MainWindow method)
EmittingStream (class in catalight.catalight_GUI)
Experiment (class in catalight.equipment.experiment_control)
expt_list (catalight.equipment.experiment_control.Experiment property)
expt_name (catalight.equipment.experiment_control.Experiment property)
expt_type (catalight.equipment.experiment_control.Experiment property)
F
figsize (catalight.analysis.user_inputs.PlotOptionList attribute)
filepath (catalight.analysis.gcdata.GCData attribute)
flush() (catalight.catalight_GUI.EmittingStream method)
forcezero (catalight.analysis.user_inputs.PlotOptionList attribute)
G
gas_comp (catalight.equipment.experiment_control.Experiment property)
Gas_System (class in catalight.equipment.gas_control.alicat)
(class in catalight.equipment.gas_control.template)
gas_type (catalight.equipment.experiment_control.Experiment property)
GC_Connector (class in catalight.equipment.gc_control.sri_gc)
(class in catalight.equipment.gc_control.template)
GCData (class in catalight.analysis.gcdata)
get_bool() (in module catalight.analysis.tools)
get_concentrations() (catalight.analysis.gcdata.GCData method)
get_expt_dirs() (catalight.analysis.user_inputs.DataExtractor method)
get_files() (catalight.analysis.chromatogram_scanner_gui.MainWindow method)
get_output() (catalight.analysis.user_inputs.DataExtractor method)
(catalight.analysis.user_inputs.DirectorySelector method)
get_output_current() (catalight.equipment.light_sources.diode_control.Diode_Laser method)
get_output_power() (catalight.equipment.light_sources.diode_control.Diode_Laser method)
(catalight.equipment.light_sources.template.Template_Laser method)
get_run_number() (catalight.analysis.gcdata.GCData method)
(in module catalight.analysis.tools)
get_timepassed() (in module catalight.analysis.tools)
get_user_inputs() (in module catalight.analysis.run_calibration)
(in module catalight.analysis.run_change_xdata)
(in module catalight.analysis.run_initial_analysis)
(in module catalight.analysis.run_plot_chromatograms_stacked)
(in module catalight.analysis.run_plot_comparison)
getParentPath() (catalight.analysis.user_inputs.DataExtractor method)
getrawdata() (catalight.analysis.gcdata.GCData method)
H
heat_rate (catalight.equipment.experiment_control.Experiment attribute)
Heater (class in catalight.equipment.heating.template)
(class in catalight.equipment.heating.watlow)
I
I_max (catalight.equipment.light_sources.diode_control.Diode_Laser property)
I_to_P() (catalight.equipment.light_sources.diode_control.Diode_Laser method)
include (catalight.analysis.user_inputs.Option attribute)
ind_var (catalight.equipment.experiment_control.Experiment property)
init_design_tab() (catalight.catalight_GUI.MainWindow method)
init_equipment() (catalight.catalight_GUI.MainWindow method)
init_figs() (catalight.catalight_GUI.MainWindow method)
init_manual_ctrl_tab() (catalight.catalight_GUI.MainWindow method)
init_plot() (catalight.analysis.chromatogram_scanner_gui.MainWindow method)
init_study_tab() (catalight.catalight_GUI.MainWindow method)
initialize_connection() (in module catalight.equipment.gc_control.peaksimple_control_demo)
initLayout() (catalight.analysis.user_inputs.DataExtractor method)
integrate_peak() (catalight.analysis.gcdata.GCData method)
integration_inds() (catalight.analysis.gcdata.GCData method)
is_busy (catalight.equipment.heating.template.Heater attribute)
(catalight.equipment.heating.watlow.Heater attribute)
(catalight.equipment.light_sources.diode_control.Diode_Laser attribute)
(catalight.equipment.light_sources.template.Template_Laser attribute)
is_running() (catalight.equipment.gc_control.sri_gc.GC_Connector method)
(catalight.equipment.gc_control.template.GC_Connector method)
K
k_mod (catalight.equipment.light_sources.diode_control.Diode_Laser property)
L
label (catalight.analysis.user_inputs.Option attribute)
lind (catalight.analysis.gcdata.GCData attribute)
list_expt_obj() (in module catalight.analysis.tools)
list_matching_files() (in module catalight.analysis.tools)
load_ctrl_file() (catalight.equipment.gc_control.sri_gc.GC_Connector method)
load_results() (in module catalight.analysis.tools)
log_power() (catalight.equipment.light_sources.diode_control.Diode_Laser method)
(catalight.equipment.light_sources.template.Template_Laser method)
M
main() (in module catalight.analysis.make_empty_cal_expt)
(in module catalight.analysis.run_calibration)
(in module catalight.analysis.run_change_xdata)
(in module catalight.analysis.run_initial_analysis)
(in module catalight.analysis.run_plot_chromatograms_stacked)
(in module catalight.analysis.run_plot_comparison)
(in module catalight.equipment.gc_delay_tester)
(in module catalight.equipment.run_diode_calibration)
MainWindow (class in catalight.analysis.chromatogram_scanner_gui)
(class in catalight.catalight_GUI)
manual_ctrl_eqpt() (catalight.catalight_GUI.MainWindow method)
max_temp (catalight.equipment.heating.template.Heater attribute)
(catalight.equipment.heating.watlow.Heater attribute)
min_sample_rate (catalight.equipment.gc_control.sri_gc.GC_Connector property)
(catalight.equipment.gc_control.template.GC_Connector property)
module
catalight
catalight.analysis
catalight.analysis.chromatogram_scanner_gui
catalight.analysis.gcdata
catalight.analysis.make_empty_cal_expt
catalight.analysis.plotting
catalight.analysis.run_calibration
catalight.analysis.run_change_xdata
catalight.analysis.run_initial_analysis
catalight.analysis.run_plot_chromatograms_stacked
catalight.analysis.run_plot_comparison
catalight.analysis.tools
catalight.analysis.user_inputs
catalight.catalight_GUI
catalight.equipment
catalight.equipment.alicat_connection_tester
catalight.equipment.experiment_control
catalight.equipment.gas_control
catalight.equipment.gas_control.alicat
catalight.equipment.gas_control.template
catalight.equipment.gc_control
catalight.equipment.gc_control.peaksimple_control_demo
catalight.equipment.gc_control.sri_gc
catalight.equipment.gc_control.template
catalight.equipment.gc_delay_tester
catalight.equipment.heating
catalight.equipment.heating.template
catalight.equipment.heating.watlow
catalight.equipment.light_sources
catalight.equipment.light_sources.diode_control
catalight.equipment.light_sources.template
catalight.equipment.power_meter
catalight.equipment.power_meter.newport
catalight.equipment.run_diode_calibration
mole_bal (catalight.analysis.user_inputs.PlotOptionList attribute)
multiplot_X_and_S() (in module catalight.analysis.plotting)
multiplot_X_vs_S() (in module catalight.analysis.plotting)
MyDelegate (class in catalight.analysis.user_inputs)
N
NewportMeter (class in catalight.equipment.power_meter.newport)
normalOutputWritten() (catalight.catalight_GUI.MainWindow method)
numpeaks (catalight.analysis.gcdata.GCData attribute)
O
open_peaksimple() (catalight.catalight_GUI.MainWindow method)
open_pickled_fig() (in module catalight.analysis.plotting)
Option (class in catalight.analysis.user_inputs)
overwrite (catalight.analysis.user_inputs.PlotOptionList attribute)
P
P_set (catalight.equipment.light_sources.diode_control.Diode_Laser property)
(catalight.equipment.light_sources.template.Template_Laser property)
P_to_I() (catalight.equipment.light_sources.diode_control.Diode_Laser method)
peaksimple (catalight.equipment.gc_control.sri_gc.GC_Connector attribute)
plot_expt_summary() (in module catalight.analysis.plotting)
plot_integration() (catalight.analysis.gcdata.GCData method)
plot_ppm() (in module catalight.analysis.plotting)
plot_run_num() (in module catalight.analysis.plotting)
plot_sweep() (catalight.equipment.experiment_control.Experiment method)
plot_X_and_S() (in module catalight.analysis.plotting)
plot_XandS (catalight.analysis.user_inputs.PlotOptionList attribute)
plot_XvsS (catalight.analysis.user_inputs.PlotOptionList attribute)
PlotOptionList (class in catalight.analysis.user_inputs)
PlotOptionsDialog (class in catalight.analysis.user_inputs)
populateTree() (catalight.analysis.user_inputs.DataExtractor method)
power (catalight.equipment.experiment_control.Experiment property)
print_details() (catalight.equipment.gas_control.alicat.Gas_System method)
(catalight.equipment.gas_control.template.Gas_System method)
print_flows() (catalight.equipment.gas_control.alicat.Gas_System method)
(catalight.equipment.gas_control.template.Gas_System method)
print_output() (catalight.equipment.light_sources.diode_control.Diode_Laser method)
(catalight.equipment.light_sources.template.Template_Laser method)
progress_signal (catalight.catalight_GUI.MainWindow attribute)
R
ramp() (catalight.equipment.heating.template.Heater method)
(catalight.equipment.heating.watlow.Heater method)
ramp_rate (catalight.equipment.heating.template.Heater attribute)
(catalight.equipment.heating.watlow.Heater attribute)
rawdata (catalight.analysis.gcdata.GCData attribute)
reactant (catalight.analysis.user_inputs.PlotOptionList attribute)
read() (catalight.equipment.power_meter.newport.NewportMeter method)
read_calibration() (catalight.equipment.light_sources.diode_control.Diode_Laser method)
(catalight.equipment.light_sources.template.Template_Laser method)
read_expt_log() (catalight.equipment.experiment_control.Experiment method)
read_flows() (catalight.equipment.gas_control.alicat.Gas_System method)
(catalight.equipment.gas_control.template.Gas_System method)
read_gc_settings() (catalight.equipment.gc_control.sri_gc.GC_Connector method)
(catalight.equipment.gc_control.template.GC_Connector method)
read_setpoint() (catalight.equipment.heating.template.Heater method)
(catalight.equipment.heating.watlow.Heater method)
read_temp() (catalight.equipment.heating.template.Heater method)
(catalight.equipment.heating.watlow.Heater method)
RepeatTimer (class in catalight.equipment.light_sources.diode_control)
(class in catalight.equipment.light_sources.template)
reset_eqpt() (catalight.catalight_GUI.MainWindow method)
results_path (catalight.equipment.experiment_control.Experiment property)
rind (catalight.analysis.gcdata.GCData attribute)
run() (catalight.catalight_GUI.Worker method)
(catalight.equipment.light_sources.diode_control.RepeatTimer method)
(catalight.equipment.light_sources.template.RepeatTimer method)
run_analysis() (in module catalight.analysis.tools)
run_experiment() (catalight.equipment.experiment_control.Experiment method)
S
sample_name (catalight.equipment.experiment_control.Experiment property)
sample_rate (catalight.equipment.experiment_control.Experiment property)
(catalight.equipment.gc_control.sri_gc.GC_Connector property)
(catalight.equipment.gc_control.template.GC_Connector property)
sample_set_size (catalight.equipment.experiment_control.Experiment attribute)
(catalight.equipment.gc_control.sri_gc.GC_Connector attribute)
(catalight.equipment.gc_control.template.GC_Connector attribute)
savedata (catalight.analysis.user_inputs.PlotOptionList attribute)
select_cal_file() (catalight.catalight_GUI.MainWindow method)
select_ctrl_file() (catalight.catalight_GUI.MainWindow method)
set_calibration_gas() (catalight.equipment.gas_control.alicat.Gas_System method)
(catalight.equipment.gas_control.template.Gas_System method)
set_current() (catalight.equipment.light_sources.diode_control.Diode_Laser method)
set_flows() (catalight.equipment.gas_control.alicat.Gas_System method)
(catalight.equipment.gas_control.template.Gas_System method)
set_form_limits() (catalight.catalight_GUI.MainWindow method)
set_gasE() (catalight.equipment.gas_control.alicat.Gas_System method)
(catalight.equipment.gas_control.template.Gas_System method)
set_gasses() (catalight.equipment.gas_control.alicat.Gas_System method)
(catalight.equipment.gas_control.template.Gas_System method)
set_graph_style() (catalight.analysis.chromatogram_scanner_gui.MainWindow method)
set_initial_conditions() (catalight.equipment.experiment_control.Experiment method)
set_plot_style() (in module catalight.analysis.plotting)
set_power() (catalight.equipment.light_sources.diode_control.Diode_Laser method)
(catalight.equipment.light_sources.template.Template_Laser method)
set_running() (catalight.equipment.gc_control.sri_gc.GC_Connector method)
(catalight.equipment.gc_control.template.GC_Connector method)
setup_style() (in module catalight.catalight_GUI)
shut_down() (catalight.catalight_GUI.MainWindow method)
(catalight.equipment.gas_control.alicat.Gas_System method)
(catalight.equipment.gas_control.template.Gas_System method)
(catalight.equipment.heating.template.Heater method)
(catalight.equipment.heating.watlow.Heater method)
(catalight.equipment.light_sources.diode_control.Diode_Laser method)
(catalight.equipment.light_sources.template.Template_Laser method)
(catalight.equipment.power_meter.newport.NewportMeter method)
signal (catalight.analysis.gcdata.GCData attribute)
start_logger() (catalight.equipment.light_sources.diode_control.Diode_Laser method)
(catalight.equipment.light_sources.template.Template_Laser method)
start_study() (catalight.catalight_GUI.MainWindow method)
start_time (catalight.equipment.experiment_control.Experiment property)
stop_logger() (catalight.equipment.light_sources.diode_control.Diode_Laser method)
(catalight.equipment.light_sources.template.Template_Laser method)
sum_spinboxes() (catalight.catalight_GUI.MainWindow method)
switch_to_hours (catalight.analysis.user_inputs.PlotOptionList attribute)
T
t_buffer (catalight.equipment.experiment_control.Experiment attribute)
t_steady_state (catalight.equipment.experiment_control.Experiment attribute)
target_molecule (catalight.analysis.user_inputs.PlotOptionList attribute)
temp (catalight.equipment.experiment_control.Experiment property)
Template_Laser (class in catalight.equipment.light_sources.template)
test_heater_performance() (catalight.equipment.heating.template.Heater method)
(catalight.equipment.heating.watlow.Heater method)
test_pressure() (catalight.equipment.gas_control.alicat.Gas_System method)
(catalight.equipment.gas_control.template.Gas_System method)
time (catalight.analysis.gcdata.GCData attribute)
time_warning() (catalight.equipment.light_sources.diode_control.Diode_Laser method)
(catalight.equipment.light_sources.template.Template_Laser method)
timestamp (catalight.analysis.gcdata.GCData attribute)
toggle_controls() (catalight.catalight_GUI.MainWindow method)
tooltip (catalight.analysis.user_inputs.Option attribute)
tot_flow (catalight.equipment.experiment_control.Experiment property)
U
units (catalight.analysis.user_inputs.PlotOptionList attribute)
update_calibration() (catalight.equipment.light_sources.diode_control.Diode_Laser method)
(catalight.equipment.light_sources.template.Template_Laser method)
update_date() (catalight.equipment.experiment_control.Experiment method)
update_eqpt_list() (catalight.equipment.experiment_control.Experiment method)
update_eqpt_status() (catalight.catalight_GUI.MainWindow method)
update_expt() (catalight.catalight_GUI.MainWindow method)
update_expt_log() (catalight.equipment.experiment_control.Experiment method)
update_gc_settings() (catalight.equipment.gc_control.sri_gc.GC_Connector method)
(catalight.equipment.gc_control.template.GC_Connector method)
update_ind_var() (catalight.catalight_GUI.MainWindow method)
update_ind_var_grid() (catalight.catalight_GUI.MainWindow method)
update_plot() (catalight.analysis.chromatogram_scanner_gui.MainWindow method)
(catalight.catalight_GUI.MainWindow method)
update_save_paths() (catalight.equipment.experiment_control.Experiment method)
V
value (catalight.analysis.user_inputs.Option attribute)
values_from_spinboxes() (catalight.catalight_GUI.MainWindow method)
values_todict() (catalight.analysis.user_inputs.PlotOptionList method)
W
widget (catalight.analysis.user_inputs.Option attribute)
Worker (class in catalight.catalight_GUI)
WorkerSignal (class in catalight.catalight_GUI)
write() (catalight.catalight_GUI.EmittingStream method)
X
xdata (catalight.analysis.user_inputs.PlotOptionList attribute)
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